FATAL : Functional Analyses porTAL
FATAL

FATAL automates the deployment of web portals required for analyzing sequence functions. It focuses on the analysis of transcript sequences (typically EST Clusters) and their corresponding peptides but can be used to analyze any sequence dataset.
Principle : from a set of sequence data and a configuration file, FATAL builds a set of shell scripts in order to :

  1. compute analyses, store and index results
  2. generate a web portal with standard bioinformatics tools (browser, search engine, blast and patscan servers).

FATAL is written in PERL and uses scripts/libraries developped at LIPM (http://lipm-bioinfo.toulouse.inra.fr). Data are stored into Lucene indices and BerkeleyDB files : no need to install any RDBMS.

FATAL has been used for different public proteome analyses (http://iant.toulouse.inra.fr/L.japonicus , http://iant.toulouse.inra.fr/G.max ) and private several RNA-seq projects (http://www.heliagene.org/P.halstedii, http://www.heliagene.org/P.viticola ).

FATAL has been written in the frame of BIOS project (http://bios.toulouse.inra.fr).

This web site is dedicated to peole who want to test FATAL on short datasets of proteins before install and use it on huge clusters/proteins datasets.

List of Portals built using this web instance of FATAL

Quick search

[PLASP] Plasmopara sp. Plasmopara sp. transcriptome resource based on P.halsteddi and P.viticola transcriptomes [authentication required]

[PLASP2] Plasmopara sp. Plasmopara sp. transcriptome resource based on P.halsteddi and P.viticola transcriptomes

[PLHAL] Plasmopara halstedii [authentication required]

[PLHAL100A1] Plasmopara halstedii race 100A1 Plasmopara halstedii race 100A1 functional annotation portal

[PLHAL304] Plasmopara halstedii race 304 Plasmopara halstedii race 304 functional annotation portal

[PLHAL334] Plasmopara halstedii race 334 Plasmopara halstedii race 334 functional annotation portal

[PLHAL700] Plasmopara halstedii race 700 Plasmopara halstedii race 700 functional annotation portal

[PLHAL703] Plasmopara halstedii race 703 Plasmopara halstedii race 703 functional annotation portal

[PLHAL710] Plasmopara halstedii race 710 Plasmopara halstedii race 710 functional annotation portal

[PLHAL730] Plasmopara halstedii race 730 Plasmopara halstedii race 730 functional annotation portal

[PLVIT] Plasmopara viticola [authentication required]