Some tips:
Field | Description | Data type |
---|---|---|
accession | Accession code [HuCLxxxxxCxxx(_x_AA) or HuX(_x_AA) for singleton: x means digits, X is the GeneBank accession (and by _ + one digit and _AA suffix for peptides)] | alpha-numeric |
definition_content | Definition/product based on InterPro automatic annotation | alpha-numeric |
definition_id | Type of definition content e.g.:raw, family | alphabetic |
definition_ontology | Source of the definition content | alphabetic |
go | Gene Ontology terms assigned automatically using InterPro analysis | |
hit_accession | Accession code of an analysis hit (based on blast, iprscan) e.g.: Q80ZN9, PF00107 | alpha-numeric |
hit_definition | Definition/product of an analysis hit (based on blast, iprscan) | alpha-numeric |
hit_id | Id code of an analysis hit (based on blast, iprscan) e.g.: CX6B2_MOUSE, PF00107 | alpha-numeric |
id | Gene name [X : X is the GeneBank accession, for peptides, accession = id] | alpha-numeric |
ipr_product | InterPro based product definition | |
length | Sequence length | numeric |
link_accession | Crosslinked object accession (cluster accession, peptide accession, read accession) | alpha-numeric |
link_definition | Crosslinked object definition (read definition including species, genus, db_xref) | alpha-numeric |
link_type | Type of cross link (between clusters, peptides, reads) | alphabetic |
product | Product definition (same as ipr_product until it has been re-assigned) | |
sequence | Sequence | alphabetic |
How to use the extended search
![]() | All elements containing the term glutenin in their definition |
![]() | All elements with these terms in this exact order. |
![]() | All elements which have a sequence's length greater than 4000 nucleotides |
![]() | All elements containing a term in their definition that matches oxygen like monooxygenase, carotenoid oxygenase, oxygen... |
![]() | All elements which accession starts with HuCL0578. This will match HuCL05781, HuCL05782, HuCL057812,... If we replace HuCL0578* with HuCL0578?, it will match HuCL05781 and HuCL05782 but not HuCL057812. ? can be placed everywhere in the string. |
![]() | All elements with both terms in their definition |
![]() | All elements with either terms in their definition |