Rosa chinensis

Analyses summary



 

Bank

Method

Parameters

NumberOfReportedHits

Rosa chinensis peptides

GDR R. chinensis DB EST (RosaESTs061406)

ncbi-tblastn 2.2.24

-e 0.000001 -b 50 -v 50

5

GenBank DB EST R. chinensis subset (20090716)

ncbi-tblastn 2.2.24

-e 0.000001 -b 50 -v 50

5

PubMed proteins (TrEMBL subset, release 2111214)

ncbi-blastp 2.2.24

-e 0.000001 -b 50 -v 50

5

Swiss-Prot database release 2111214

ncbi-blastp 2.2.24

-e 0.000001 -b 50 -v 50

5

Arabidopsis thaliana proteome TAIR10

ncbi-blastp 2.2.24

-e 0.000001 -b 50 -v 50

5

Fragaria vesca (strawberry) proteome (1.0)

ncbi-blastp 2.2.24

-e 0.000001 -b 50 -v 50

5

Prunus persica proteome (1.0)

ncbi-blastp 2.2.24

-e 0.000001 -b 50 -v 50

5

Rosa chinensis peptides

ncbi-blastp 2.2.24

-e 0.0001 -F F

no limit

 

Rosa chinensis transcripts

GDR R. chinensis DB EST (RosaESTs061406)

wu-blastn 2

E=0.000001 B=50 V=50

5

GenBank DB EST R. chinensis subset (20090716)

wu-blastn 2

-e 0.000001 -b 50 -v 50

5

PubMed proteins (TrEMBL subset, release 2111214)

ncbi-blastx 2.2.24

-e 0.000001 -b 50 -v 50

5

Swiss-Prot database release 2111214

ncbi-blastx 2.2.24

-e 0.000001 -b 50 -v 50

5

Arabidopsis thaliana proteome TAIR10

ncbi-blastx 2.2.24

-e 0.000001 -b 50 -v 50

5

Fragaria vesca (strawberry) transcripts (1.0)

wu-blastn 2

E=0.000001 B=50 V=50

5

Prunus persica transcripts (1.0)

wu-blastn 2

E=0.000001 B=50 V=50

5

Rosa chinensis transcripts

ncbi-blastn 2.2.24

-r 1 -q -1 -e 0.00001

no limit



List of analyses available

ROSCH Rosa chinensis transcriptome resource
  1. 20120109.ROSCH.clusters.blast.besthits.xls [42M]
  2. 20120109.ROSCH.peptides.blast.besthits.xls [50M]
  3. 20120227.ROSCH.clusters.blast.besthits.xls [42M]
  4. 20120227.ROSCH.peptides.blast.besthits.xls [49M]
  5. 20120229.ROSCHClusters.blast.besthits.xls [72M]
  6. 20120229.ROSCHPeptides.blast.besthits.xls [79M]
  7. Annotation.pathologic.gz [1.3M]
  8. Annotation.tsv [5.5M]